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pairwasm_alignment

A bioinformatics tool for pairwise sequence alignment

Demonstration of my project pairwasm_alignment. The source code is available on this GitHub repository.

Warning: Smith-Waterman and Needleman-Wunsch are dynamic programming algorithms with quadratic time complexity , making them time expensive. Since the Wasm module runs on your local machine, avoid using this demo with large sequences.

Input protein sequences

The sequences must be in FASTA format without header. The demo only accepts amino acid sequences and must use IUPAC nomenclature. Special symbols such as "-" or "*" are banned. See an example by clicking the "Load example" button below.

Parameters

Output

The output will be shown here...

| = match, : = mismatch, _ = gap